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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr2g093740.11 | ||||||||
Common Name | MTR_2g093740 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | ARF | ||||||||
Protein Properties | Length: 634aa MW: 71133.3 Da PI: 8.5656 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 69.5 | 4.5e-22 | 38 | 152 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT...................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...................ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangL 74 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g W++++iyr++++r++lt+GW+ Fv++++L Medtr2g093740.11 38 FCKTLTASDTSTHGGFSVPRRAAEDCfpplvqhyepvwiclfedyK-QQRPSQELVAKDLHGVGWKFRHIYRGQPRRHLLTTGWSIFVSQKNL 129 99******************************99999999999863.3345679*************************************** PP -TT-EEEEEE-SSSEE..EEEEE-S CS B3 75 kegDfvvFkldgrsefelvvkvfrk 99 +gD v+F + +++el+++++r+ Medtr2g093740.11 130 VSGDAVLFL--RGENGELRLGIRRA 152 *********..4499999****996 PP | |||||||
2 | Auxin_resp | 119.8 | 2.1e-39 | 177 | 259 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsL 82 +a+a+s ks+F+v+Y+Pras+++Fvv+++k+ k+++++v++G+Rfkm+fe+++s+err+ sG+v+g+sdldp++Wp+SkWr+L Medtr2g093740.11 177 VANAISAKSMFHVFYSPRASHADFVVPYQKYAKSIRNPVTIGTRFKMKFEMDESPERRCsSGIVTGMSDLDPYKWPKSKWRCL 259 689********************************************************9**********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.44E-39 | 34 | 161 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-36 | 35 | 163 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.42E-19 | 36 | 151 | No hit | No description |
SMART | SM01019 | 8.8E-21 | 38 | 153 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.843 | 38 | 153 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.9E-20 | 38 | 152 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.3E-33 | 177 | 259 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 20.726 | 565 | 633 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 8.34E-8 | 568 | 633 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0010050 | Biological Process | vegetative phase change | ||||
GO:0010158 | Biological Process | abaxial cell fate specification | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 634 aa Download sequence Send to blast |
MCCIQLAGMC LDDKEPEGLE ADDEGNGRSP TKLASHMFCK TLTASDTSTH GGFSVPRRAA 60 EDCFPPLVQH YEPVWICLFE DYKQQRPSQE LVAKDLHGVG WKFRHIYRGQ PRRHLLTTGW 120 SIFVSQKNLV SGDAVLFLRG ENGELRLGIR RAARPRNGLP ESIIGNQSCS PSFLSSVANA 180 ISAKSMFHVF YSPRASHADF VVPYQKYAKS IRNPVTIGTR FKMKFEMDES PERRCSSGIV 240 TGMSDLDPYK WPKSKWRCLM VRWDEDIGAN HQDRVSPWEI DPSTSLPPLN IQSSRRLKKL 300 RTGLHVESPS HFITAGDSGF MDFDESIRSS KVLQGQEKTS FMSLYYGCDT VTKQKEFDIN 360 SLRHTNLASN GARKITSSEF TRIQPSSYAD FTEMNRFPRV LQAQEIYPLR SLTGKVDLNL 420 NSWGKTNVSY TKYNLHNATK LNFHSLGSEV LQNSSFPYGD IHKVGQGSSM LCSKPTNFQL 480 GNVSFNTPSS QIGALRNEVG LSSFKIRNEQ KLQNDISAAT SLDANIRISN DENFKEMVNP 540 CKLFGFSLSA AAETTSQNLQ NSAKRSCTKV HKQGSLVGRA IDLSRLSSYN DLVSELERLF 600 GMEGLLRDPD KGWRILYTDS ENDIMVVGDD PWQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldy_A | 4e-85 | 11 | 285 | 101 | 357 | Auxin response factor 1 |
4ldy_B | 4e-85 | 11 | 285 | 101 | 357 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). {ECO:0000256|RuleBase:RU004561}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC150891 | 0.0 | AC150891.3 Medicago truncatula chromosome 2 clone mth2-76a9, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013465283.1 | 0.0 | auxin response factor-like protein | ||||
Refseq | XP_013465284.1 | 0.0 | auxin response factor-like protein | ||||
Swissprot | Q9ZTX9 | 0.0 | ARFD_ARATH; Auxin response factor 4 | ||||
TrEMBL | A0A072VBD1 | 0.0 | A0A072VBD1_MEDTR; Auxin response factor | ||||
TrEMBL | A0A072VD00 | 0.0 | A0A072VD00_MEDTR; Auxin response factor | ||||
STRING | GLYMA12G29280.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60450.1 | 0.0 | auxin response factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Medtr2g093740.11 |
Entrez Gene | 11416074 |
Publications ? help Back to Top | |||
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